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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38373797_38377237_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38373797 - 38377237
Intron Length:
3441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TTTTTCCAAACT
Flanking Amino Acid:
FAEEVYTRVVRRTLKNGTTT
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
82.6
30.5
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
91.1
0.92
0.6
87.8
22.4
Minor 5ss
48.7
-0.1
2.8
73.2
37.2
Minor BPS
63.3
0.49
2
88.18
37

Associated Gene:

Gene:
GDA
Ensembl Gene ID:
ENSAPLG00000015274
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015939
38348193 - 38384538
36346