About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38426114_38429090_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38426114 - 38429090
Intron Length:
2977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTTTTTTAATC
Flanking Amino Acid:
KYKLLSKPKKCVKCLQKAVK
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.8
78.1
26.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
88
0.86
0.6
83.6
24.7
Minor 5ss
34.2
-1.8
2.8
36.8
41.9
Minor BPS
77.2
0.83
1
79.83
28.4

Associated Gene:

Gene:
C9orf85
Ensembl Gene ID:
ENSAPLG00000018534
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046237
38425052 - 38438305
13254