About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38429198_38438121_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38429198 - 38438121
Intron Length:
8924

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCGGGCAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTCTCTTATTT
Flanking Amino Acid:
RRHDASSRRKKINAKLHDGV
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.5
0.3
1.4
51.4
47
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
24.1
-3
3.2
29
43.5
Minor BPS
61.2
0.43
1.6
76.56
40.7

Associated Gene:

Gene:
C9orf85
Ensembl Gene ID:
ENSAPLG00000018534
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046237
38425052 - 38438305
13254