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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38444528_38452994_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38444528 - 38452994
Intron Length:
8467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTTTGTTAATA
Flanking Amino Acid:
IDAAWVALRTRYGIRPENVI
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
84.4
0.85
1
84
34.5
Major PPT
80.2
0.68
0.8
77.9
36.6
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
68.4
0.57
2
82.43
32.9

Associated Gene:

Gene:
ABHD17B
Ensembl Gene ID:
ENSAPLG00000015189
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015833
38441890 - 38454267
12378