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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38502267_38502308_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
38502267 - 38502308
Intron Length:
42

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTCAGTTTT
5'SS Class:
weak_major
3'SS Sequence:
TGGACATATCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GTTTTTTCAATT
Flanking Amino Acid:
TEKTCYREKECLKNIFKYYP
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.6
0.3
1.4
71.7
40.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
50.6
0.01
1.2
46.4
44.4
Minor 5ss
43.5
-0.7
2.9
60
44.3
Minor BPS
65.5
0.57
1.5
80.29
35.9

Associated Gene:

Gene:
CEMIP2
Ensembl Gene ID:
ENSAPLG00000014669
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015334
38488108 - 38524823
36716