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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38505029_38505411_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38505029 - 38505411
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGCC
5'SS Class:
major
3'SS Sequence:
TGTGTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
ACATAATGAACT
Flanking Amino Acid:
VTIHATNGLLIKDTIGYDTL
Intron Amino Acid Position:
559

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
69.5
36.3
Major BPS
67.7
0.44
1
58
38.9
Major PPT
82.9
0.74
0.9
77.3
37
Minor 5ss
32.7
-2
3.4
40.9
40.8
Minor BPS
48.5
-0
1.9
67.02
42.7

Associated Gene:

Gene:
CEMIP2
Ensembl Gene ID:
ENSAPLG00000014669
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015334
38488108 - 38524823
36716