About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38506259_38508868_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38506259 - 38508868
Intron Length:
2610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCGT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
CACTCCTTATTT
Flanking Amino Acid:
LISNAAAGSQDAGIWYLFHR
Intron Amino Acid Position:
651

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
69.5
42.7
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
85.5
0.8
0.8
80.4
30.4
Minor 5ss
27
-2.6
3.3
38.6
46.5
Minor BPS
62.6
0.48
1.6
72.6
44.8

Associated Gene:

Gene:
CEMIP2
Ensembl Gene ID:
ENSAPLG00000014669
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015334
38488108 - 38524823
36716