About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38508998_38510615_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38508998 - 38510615
Intron Length:
1618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGAAA
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
YNNRVHSNFKAGLFIDKGVK
Intron Amino Acid Position:
694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
71.9
34
Major BPS
57.6
0.19
1.3
67.9
36.3
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
37.1
-1.5
3.3
49.8
46.8
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
CEMIP2
Ensembl Gene ID:
ENSAPLG00000014669
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015334
38488108 - 38524823
36716