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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38513466_38513985_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38513466 - 38513985
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
AACTTTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATGAACT
Flanking Amino Acid:
RGGDILIQNSGFADNGIGLT
Intron Amino Acid Position:
767

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
77.9
36.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.7
0.6
0.8
74.3
35.6
Minor 5ss
45.9
-0.4
2.5
54.6
42.8
Minor BPS
64.7
0.54
1.7
84.57
35.1

Associated Gene:

Gene:
CEMIP2
Ensembl Gene ID:
ENSAPLG00000014669
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015334
38488108 - 38524823
36716