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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38514022_38514733_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38514022 - 38514733
Intron Length:
712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GTTGCTTTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TATCTCTTATCT
Flanking Amino Acid:
ADNGIGLTFASDGSFPNDEG
Intron Amino Acid Position:
779

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
68.7
0.42
1
65
41.3
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
67.2
0.62
1.6
82.51
38.4

Associated Gene:

Gene:
CEMIP2
Ensembl Gene ID:
ENSAPLG00000014669
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015334
38488108 - 38524823
36716