About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38514890_38517149_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38514890 - 38517149
Intron Length:
2260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTAACA
Flanking Amino Acid:
DNKGRTLPRNRTFPIRGFQI
Intron Amino Acid Position:
831

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
82.1
37.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.1
0.79
0.9
81.9
33.5
Minor 5ss
39.8
-1.1
2.8
52.3
44.3
Minor BPS
78.3
0.88
1.4
88.34
28.1

Associated Gene:

Gene:
CEMIP2
Ensembl Gene ID:
ENSAPLG00000014669
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015334
38488108 - 38524823
36716