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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38519734_38520971_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38519734 - 38520971
Intron Length:
1238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAACACCT
5'SS Class:
major
3'SS Sequence:
TTTTTTTGTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TCTCCCCTACCT
Flanking Amino Acid:
DKKFYFDNSTGLLFLFLQAK
Intron Amino Acid Position:
1090

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.4
1.2
60
44.9
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
86.7
0.83
0.8
84.9
29.9
Minor 5ss
39.7
-1.2
3.1
50.2
45.6
Minor BPS
55.7
0.26
2
78.26
43.7

Associated Gene:

Gene:
CEMIP2
Ensembl Gene ID:
ENSAPLG00000014669
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015334
38488108 - 38524823
36716