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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38521192_38521795_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38521192 - 38521795
Intron Length:
604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGATAATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
TTTTGTTTGATA
Flanking Amino Acid:
VPCTKCGTTQMVFTSDPHKN
Intron Amino Acid Position:
1164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
68.4
0.42
1
60.3
44.8
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
64.4
0.45
1.7
77.53
33.6

Associated Gene:

Gene:
CEMIP2
Ensembl Gene ID:
ENSAPLG00000014669
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015334
38488108 - 38524823
36716