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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38948655_38950573_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38948655 - 38950573
Intron Length:
1919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACAGTAT
5'SS Class:
major
3'SS Sequence:
ACTTGCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
ATGGCCTGAAAT
Flanking Amino Acid:
QIFIYGQQWPVGSLEQAMLD
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.3
0.32
1.1
60.4
40.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
80
0.68
0.9
73.2
36.5
Minor 5ss
37.2
-1.5
3.7
54.7
49.5
Minor BPS
57
0.3
1.7
72.77
43.6

Associated Gene:

Gene:
TRPM3
Ensembl Gene ID:
ENSAPLG00000009788
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010284
38730048 - 39010154
280107