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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38950709_38953286_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38950709 - 38953286
Intron Length:
2578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGACCA
5'SS Class:
major
3'SS Sequence:
TTGTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTCTGTATTT
Flanking Amino Acid:
ISRLEELYNTRHGPSNTLYH
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
56.5
42.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86
0.81
0.8
80.9
31
Minor 5ss
31.3
-2.1
3.3
40.7
45.1
Minor BPS
50.2
0.08
2.2
74.81
43.2

Associated Gene:

Gene:
TRPM3
Ensembl Gene ID:
ENSAPLG00000009788
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010284
38730048 - 39010154
280107