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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38953338_38960160_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38953338 - 38960160
Intron Length:
6823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTCGTTACAG
Flanking Amino Acid:
LYHLVRDVKKGNLPPDYRIS
Intron Amino Acid Position:
579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
83.2
0.75
0.9
76.8
36.8
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
49.9
-0.1
2.4
68.4
44.9

Associated Gene:

Gene:
TRPM3
Ensembl Gene ID:
ENSAPLG00000009788
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010284
38730048 - 39010154
280107