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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38961714_38963738_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38961714 - 38963738
Intron Length:
2025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGAC
5'SS Class:
strong_major
3'SS Sequence:
ACAATTCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
ATCTCTACAATT
Flanking Amino Acid:
PKALKLLGMEDDVPLRRGRK
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.8
34.3
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
68.5
0.42
0.9
61.2
39.3
Minor 5ss
31.6
-2.1
3.4
42.4
45.1
Minor BPS
51.1
0.11
1.8
71.33
40.1

Associated Gene:

Gene:
TRPM3
Ensembl Gene ID:
ENSAPLG00000009788
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010284
38730048 - 39010154
280107