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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38965177_38967642_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38965177 - 38967642
Intron Length:
2466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCATT
5'SS Class:
major
3'SS Sequence:
ATCATTGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATTATTA
Flanking Amino Acid:
LRMRKNSGLKVILGILLPPS
Intron Amino Acid Position:
809

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.3
81.8
38.5
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
69.4
0.44
0.9
66.4
40
Minor 5ss
40.7
-1
3
57.9
46.3
Minor BPS
59.8
0.3
1.8
73.6
38.1

Associated Gene:

Gene:
TRPM3
Ensembl Gene ID:
ENSAPLG00000009788
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010284
38730048 - 39010154
280107