About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38975563_38980261_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38975563 - 38980261
Intron Length:
4699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGATAT
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTCATTTAATT
Flanking Amino Acid:
APIVKFWFYTLAYIGYLMLF
Intron Amino Acid Position:
912

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
71.8
34.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
89.5
0.89
0.7
84
31
Minor 5ss
41.8
-0.9
3.2
62
43.4
Minor BPS
66.7
0.6
1.4
80.91
34.4

Associated Gene:

Gene:
TRPM3
Ensembl Gene ID:
ENSAPLG00000009788
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010284
38730048 - 39010154
280107