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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38996104_38996647_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38996104 - 38996647
Intron Length:
544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTAATCTGATGT
Flanking Amino Acid:
LLVNLLIAVFNNTFFEVKSI
Intron Amino Acid Position:
1147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
74.7
28.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74
0.54
0.8
65.9
35.9
Minor 5ss
29.2
-2.4
3.1
34.7
35.4
Minor BPS
45.9
-0.2
2
66.13
44.1

Associated Gene:

Gene:
TRPM3
Ensembl Gene ID:
ENSAPLG00000009788
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010284
38730048 - 39010154
280107