Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_38996848_38998042_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

38996848 - 38998042

Intron Length:

1195

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAA|GTAAGCCTT

5'SS Class:

strong_major

3'SS Sequence:

ATTGTTTCTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

CTTTGCCAAACT

Flanking Amino Acid:

SDPDERDYGLKLFITEDELK

Intron Amino Acid Position:

1181

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

75.5

40.6

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

83.3

0.75

0.8

77.1

36.6

Minor 5ss

45.5

-0.5

3.1

65.9

39.3

Minor BPS

48.4

-0

2.4

76.24

46.2

Associated Gene:

Gene:

TRPM3

Ensembl Gene ID:

ENSAPLG00000009788

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010284

38730048 - 39010154

280107