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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39082973_39083058_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39082973 - 39083058
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
GTGGAGATAATA
Flanking Amino Acid:
PFRVVDEINQGMDPVNERRV
Intron Amino Acid Position:
994

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
82.1
31
Major BPS
75.5
0.63
1
66
40.9
Major PPT
88.7
0.87
0.6
89.2
19.8
Minor 5ss
31.4
-2.1
3.2
42.1
45
Minor BPS
39.3
-0.8
2.3
49.66
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009355
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009786
39079886 - 39120204
40319