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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39087066_39087269_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39087066 - 39087269
Intron Length:
204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTACTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTTACTAAAAAT
Flanking Amino Acid:
LDNYKQNISQVKERWLNPLK
Intron Amino Acid Position:
894

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
74.4
33.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
78.5
0.64
0.8
70.3
35.3
Minor 5ss
33.1
-1.9
3.4
48.8
46.8
Minor BPS
45.7
-0.2
2
66.63
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009355
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009786
39079886 - 39120204
40319