Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39088660_39094271_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39088660 - 39094271

Intron Length:

5612

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAACTTCC

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTCTAATAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

GTATTTTTAATA

Flanking Amino Acid:

AASTQLRASEQTFCELDEKK

Intron Amino Acid Position:

785

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

1.1

75.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

80.1

0.68

0.8

77.7

29.7

Minor 5ss

-0.3

2.5

62.8

41.8

Minor BPS

70.6

0.64

1.1

72.24

33.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009355

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009786

39079886 - 39120204

40319