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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39097508_39099924_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39097508 - 39099924
Intron Length:
2417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGAAAC
5'SS Class:
strong_major
3'SS Sequence:
GTTCCTCCCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATAGGATTAATC
Flanking Amino Acid:
LESKIAVKYDSIKQLEQDAI
Intron Amino Acid Position:
702

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
75.1
35.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.4
0.48
0.8
65.6
30.5
Minor 5ss
32.4
-2
3.2
42.3
44.8
Minor BPS
47
-0.2
2
58.61
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009355
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009786
39079886 - 39120204
40319