About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39100404_39102528_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39100404 - 39102528
Intron Length:
2125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTGTCAAAA
Flanking Amino Acid:
TEKTRNMIEKVIQETKLKQL
Intron Amino Acid Position:
588

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
100
1.24
0.5
100
0
Major PPT
86.1
0.81
0.7
85.1
29.3
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
49.8
-0
2.3
72.5
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009355
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009786
39079886 - 39120204
40319