Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39105961_39106919_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39105961 - 39106919

Intron Length:

959

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTTAC

5'SS Class:

strong_major

3'SS Sequence:

TCTTAAATCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAA

U12 Branch Point Sequence:

ACTGTCTTAAAT

Flanking Amino Acid:

EKNNQEREKRRIIDRIEQLN

Intron Amino Acid Position:

422

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

81.2

26.2

Major BPS

77.8

0.69

78.2

31.8

Major PPT

73.1

0.52

0.9

66.1

38.4

Minor 5ss

42.2

-0.9

2.8

52.8

38.5

Minor BPS

63.5

0.5

1.5

74.89

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009355

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009786

39079886 - 39120204

40319