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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39107176_39108086_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39107176 - 39108086
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TCAAAATTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
ACTCTCTTAATG
Flanking Amino Acid:
QDALEMKDKQIEEINQAFRM
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.1
31.5
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
62.5
0.28
1
58.8
41.4
Minor 5ss
36.7
-1.5
3.5
51
39.9
Minor BPS
65
0.33
1.3
62.57
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009355
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009786
39079886 - 39120204
40319