About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39114830_39116086_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39114830 - 39116086
Intron Length:
1257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ACTTCTTTATTT
Flanking Amino Acid:
MDNLCQFLPQDRVGEFARLT
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
68.1
42.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
80.4
0.68
0.8
76.1
32.2
Minor 5ss
39
-1.2
2.8
49
46.8
Minor BPS
65.5
0.56
1.5
77.64
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009355
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009786
39079886 - 39120204
40319