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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39125471_39126591_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39125471 - 39126591
Intron Length:
1121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTATCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TATATCTTATCT
Flanking Amino Acid:
IEYESDRTYQIIFEAIRGVS
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
85.9
0.81
0.8
79.8
32.1
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
66
0.58
1.6
81.74
39.5

Associated Gene:

Gene:
MAMDC2
Ensembl Gene ID:
ENSAPLG00000009256
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009634
39124479 - 39191388
66910