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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39126852_39130426_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39126852 - 39130426
Intron Length:
3575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTATTTTACTT
Flanking Amino Acid:
GPKGDHTTGVGYYMYIEASD
Intron Amino Acid Position:
549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.4
19.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.2
0.5
1.1
75.9
37.7
Minor 5ss
34.1
-1.8
2.8
39.9
46.1
Minor BPS
55.5
0.25
1.6
72.43
39.2

Associated Gene:

Gene:
MAMDC2
Ensembl Gene ID:
ENSAPLG00000009256
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009634
39124479 - 39191388
66910