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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39143304_39144636_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39143304 - 39144636
Intron Length:
1333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAATCAA
5'SS Class:
major
3'SS Sequence:
CAATGTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TACTCAATAACT
Flanking Amino Acid:
YRVGDHTTGFGYYLLANTKF
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
67.8
39
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
73.1
0.52
1
65.7
40.4
Minor 5ss
33.4
-1.9
3
41.4
45.1
Minor BPS
60
0.39
1.9
79.79
41.5

Associated Gene:

Gene:
MAMDC2
Ensembl Gene ID:
ENSAPLG00000009256
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009634
39124479 - 39191388
66910