About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39146395_39149779_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39146395 - 39149779
Intron Length:
3385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTATTT
Flanking Amino Acid:
VDFSAPYPMEVVFEVAFNSA
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
70.2
35.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
85.7
0.8
0.8
77.9
40.2
Minor 5ss
30.6
-2.2
3.1
38.6
46.4
Minor BPS
56.7
0.29
1.8
77.56
39

Associated Gene:

Gene:
MAMDC2
Ensembl Gene ID:
ENSAPLG00000009256
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009634
39124479 - 39191388
66910