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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39150037_39153821_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39150037 - 39153821
Intron Length:
3785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
TTTACACTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
GTTTCTTTTACA
Flanking Amino Acid:
PKDHTLNSELGHYMYVDSVY
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67.1
44.6
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
77.9
0.63
0.8
75
34.8
Minor 5ss
39.3
-1.2
2.8
43.9
43.7
Minor BPS
71.8
0.68
1.6
80.12
35.4

Associated Gene:

Gene:
MAMDC2
Ensembl Gene ID:
ENSAPLG00000009256
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009634
39124479 - 39191388
66910