Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39234982_39245477_R

Intron Information:

Intron Rank:

147664

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

39234982 - 39245477

Intron Length:

10496

Sequence Information:

Terminal Dinucleotides:

GT-GG

5'SS Sequence:

CAG|GTGAGGTGG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTAAGG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTCCAA

U12 Branch Point Sequence:

TTTTTTTTAAGG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

66.5

41.6

Major BPS

68.1

0.45

1.3

78.7

34.9

Major PPT

46.8

-0.1

3.3

82.2

33.3

Minor 5ss

30.7

-2.2

3.2

37.8

47.1

Minor BPS

68.7

0.45

1.6

74.22

38.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026790

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029965

39232060 - 39245892

13833