About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_3923639_3926168_R

Intron Information:

Intron Rank:
155604
Intron Class:
major
Intron Phase:
Intron Coordinates:
3923639 - 3926168
Intron Length:
2530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTAATTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTGATTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
86.4
0.82
0.8
81
36.2
Minor 5ss
39.5
-1.2
3
50.5
40
Minor BPS
63.7
0.51
1.6
78.91
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031227
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029999
3922417 - 3926395
3979