Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39376216_39377330_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39376216 - 39377330

Intron Length:

1115

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGCAGTAC

5'SS Class:

major

3'SS Sequence:

CATTTATTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTAAT

U12 Branch Point Sequence:

TTGTGTTTGACT

Flanking Amino Acid:

AQKLAKSRKKAPEGESQPMT

Intron Amino Acid Position:

492

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.9

0.4

1.1

59.6

35.8

Major BPS

82.2

0.8

0.9

81.6

Major PPT

83.3

0.75

0.8

77.4

35.5

Minor 5ss

29.9

-2.3

3.5

40.2

46.2

Minor BPS

0.55

1.8

82.48

39.6

Associated Gene:

Gene:

APBA1

Ensembl Gene ID:

ENSAPLG00000008905

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009275

39352886 - 39387808

34923