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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39381545_39382375_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39381545 - 39382375
Intron Length:
831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTCTC
5'SS Class:
major
3'SS Sequence:
TCTTTTGATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTCTTTTGATA
Flanking Amino Acid:
HFSKSENCKDVYIEKQKGEI
Intron Amino Acid Position:
643

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
70.9
39.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
76.8
0.6
0.9
72.9
36.6
Minor 5ss
47.3
-0.3
2.8
66.3
37.9
Minor BPS
66.8
0.52
1.1
74.7
30

Associated Gene:

Gene:
APBA1
Ensembl Gene ID:
ENSAPLG00000008905
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009275
39352886 - 39387808
34923