Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39382589_39386089_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39382589 - 39386089

Intron Length:

3501

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACAGAGA

5'SS Class:

major

3'SS Sequence:

TTTCTTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

TCTGCCAGCATA

Flanking Amino Acid:

PLSTCQSIIKGLKNQARVKL

Intron Amino Acid Position:

714

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.9

0.49

1.1

63.1

42.9

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

95.4

1.02

0.5

91.9

18.9

Minor 5ss

29.9

-2.3

3.3

40.1

45.6

Minor BPS

42.8

-0.5

2.1

56.63

Associated Gene:

Gene:

APBA1

Ensembl Gene ID:

ENSAPLG00000008905

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009275

39352886 - 39387808

34923