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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39386975_39387337_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39386975 - 39387337
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TATTGATTAATT
Flanking Amino Acid:
VHILSNAVGEIHMKTMPAAM
Intron Amino Acid Position:
801

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
84.2
0.77
0.7
78.1
36.2
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
61.8
0.45
2
82.44
38.8

Associated Gene:

Gene:
APBA1
Ensembl Gene ID:
ENSAPLG00000008905
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009275
39352886 - 39387808
34923