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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39403043_39406486_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39403043 - 39406486
Intron Length:
3444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGA
5'SS Class:
strong_major
3'SS Sequence:
CCCGATTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TATTCCCGATTC
Flanking Amino Acid:
VETSGRQASQGDEIPKSSSR
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
71.7
0.49
0.9
64.5
36.2
Minor 5ss
32.2
-2
3
40.7
45.1
Minor BPS
48.3
-0.1
2
65.57
39.8

Associated Gene:

Gene:
FAM189A2
Ensembl Gene ID:
ENSAPLG00000008627
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008979
39399349 - 39422770
23422