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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39406563_39407082_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39406563 - 39407082
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGATTTTCAACT
Flanking Amino Acid:
AVVSQISSEQEAALQIGVVE
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
71.3
33.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
85.9
0.81
0.8
78.1
40.1
Minor 5ss
45.3
-0.5
2.7
60.2
44.5
Minor BPS
63.8
0.51
1.5
77.55
38.7

Associated Gene:

Gene:
FAM189A2
Ensembl Gene ID:
ENSAPLG00000008627
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008979
39399349 - 39422770
23422