Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39410797_39410918_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39410797 - 39410918

Intron Length:

122

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTACGTGAG

5'SS Class:

major

3'SS Sequence:

TGCATTTGATTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTTAA

U12 Branch Point Sequence:

GCTTTGTTAACG

Flanking Amino Acid:

QIFATRRSCIDESQISAEEI

Intron Amino Acid Position:

121

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.1

0.4

1.1

58.9

40.3

Major BPS

72.1

0.55

1.2

63.7

43.9

Major PPT

62.4

0.28

62.7

Minor 5ss

32.8

-2

3.4

40.9

Minor BPS

0.05

2.1

63.23

44.8

Associated Gene:

Gene:

FAM189A2

Ensembl Gene ID:

ENSAPLG00000008627

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008979

39399349 - 39422770

23422