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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39411858_39413644_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39411858 - 39413644
Intron Length:
1787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCAGA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTGTTTTTAAAG
Flanking Amino Acid:
FVSSVPRCDLVDMGENKICF
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
66.8
40.3
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
80.8
0.69
1
82.2
33.3
Minor 5ss
33.4
-1.9
2.8
36.7
42.5
Minor BPS
65.9
0.36
1.4
67.73
40.3

Associated Gene:

Gene:
FAM189A2
Ensembl Gene ID:
ENSAPLG00000008627
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008979
39399349 - 39422770
23422