Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_3942781_3942957_F

Intron Information:

Intron Rank:

128291

Intron Class:

major

Intron Phase:

Intron Coordinates:

3942781 - 3942957

Intron Length:

177

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGGATG

5'SS Class:

major

3'SS Sequence:

CTTTTTTCCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTTTCTTTTCTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

75.5

40.2

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

0.83

0.7

80.6

31.4

Minor 5ss

38.3

-1.3

3.3

53.3

43.9

Minor BPS

46.2

-0.2

3.6

83.31

38.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019089

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023320

3942708 - 3943564

857