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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39464254_39464785_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39464254 - 39464785
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTCTTCTATT
Flanking Amino Acid:
IRPEKNFDSLEALISAIQED
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1.2
85.3
32.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.9
0.74
0.7
81.4
29.4
Minor 5ss
35.7
-1.6
2.7
45.8
42.3
Minor BPS
56.2
0.28
1.8
77.09
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030187
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034912
39463446 - 39466813
3368