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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39464889_39466068_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39464889 - 39466068
Intron Length:
1180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTCATCATAAAT
Flanking Amino Acid:
PFYKNTKKSVETHIIHTFKE
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
74.3
34.1
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
82.8
0.74
0.6
81.5
23.5
Minor 5ss
33.2
-1.9
3.4
45.7
43.4
Minor BPS
54.5
0.22
1.8
74.71
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030187
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034912
39463446 - 39466813
3368