Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39556782_39560206_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39556782 - 39560206

Intron Length:

3425

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGCTTTC

5'SS Class:

major

3'SS Sequence:

TTTTATTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTCCATTAATA

Flanking Amino Acid:

EADSFEYTGQEEQTAVKDAS

Intron Amino Acid Position:

2643

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.2

0.57

1.2

73.2

39.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

93.8

0.99

0.6

92.5

25.7

Minor 5ss

48.9

-0.1

2.9

69.7

41.2

Minor BPS

72.5

0.7

1.5

82.43

31.7

Associated Gene:

Gene:

PRUNE2

Ensembl Gene ID:

ENSAPLG00000020377

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044855

39537603 - 39627927

90325

ENSAPLT00000033511

39525165 - 39627927

102763