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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39625040_39627774_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39625040 - 39627774
Intron Length:
2735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCCAA
5'SS Class:
major
3'SS Sequence:
TCTTCTAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTTCTAAAACA
Flanking Amino Acid:
VLQETQLNPQGVSIEEVMLK
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
67
40.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
70.8
0.47
1
67.1
37
Minor 5ss
37.2
-1.4
3
47.6
47.8
Minor BPS
55.7
0.18
1.9
71.7
40.8

Associated Gene:

Gene:
PRUNE2
Ensembl Gene ID:
ENSAPLG00000020377
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044855
39537603 - 39627927
90325
ENSAPLT00000033511
39525165 - 39627927
102763
ENSAPLT00000022085
39582841 - 39671721
88881