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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_39627928_39637966_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39627928 - 39637966
Intron Length:
10039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCAACATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TACTTTTCAACA
Flanking Amino Acid:
ITQQLAYLLRGSILFKCMSS
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
74.8
0.56
0.9
70.5
39.5
Minor 5ss
26.7
-2.7
3.3
37.5
47.2
Minor BPS
60.9
0.34
1.5
68.03
38.6

Associated Gene:

Gene:
PRUNE2
Ensembl Gene ID:
ENSAPLG00000020377
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022085
39582841 - 39671721
88881